It's no secret that proper filtration is essential for a healthy reef tank. Even with the best equipment and the right intentions, filtration mistakes happen and they can seriously impact your water quality and livestock health. Fortunately, most issues are easy to prevent once you know what to look for. Here’s a look at seven common filtration mistakes and some strategies to avoid them.

Mistake #1: Not Replacing Filter Socks Regularly

Filter socks capture detritus, uneaten food, and other debris. But if they aren’t replaced often enough, they can clog and become a source of pollution rather than filtration.

Aim to replace or clean filter socks at least every 3 days. If you’re looking for an easier alternative, automatic fleece rollers can cut down on the amount of hands-on maintenance needed.

Mistake #2: Using the Wrong Size Protein Skimmer

A skimmer that's too small won’t remove enough waste, while an oversized skimmer can overskim and strip out essential nutrients.

Always match your skimmer to your tank size and bioload based on the manufacturer’s guidelines. Planning to add more fish later? Choose a skimmer that can grow with your system, but avoid going so large that you lose efficiency.

Mistake #3: Running GFO or Carbon Constantly

GFO and carbon are great tools, but only when needed. Running them all the time can lead to increased expense with little benefit.

Use them wisely:

  • GFO: When phosphate levels are high
  • Carbon: To remove discoloration, odors, or toxins
  • Remove media once the problem is solved

Letting your tank run naturally most of the time will lead to better long-term stability.

Carbon Media Reactor
Hanna Checker Phosphate Test

 

Mistake #4: Neglecting Sump & AIO Chamber Maintenance

It’s easy to focus on your display tank and forget about the sump or filtration chambers, but these hidden areas can collect a lot of detritus over time.

A good practice is to inspect and clean your sump or all-in-one (AIO) compartments once a month. Remove accumulated debris, rinse filter sponges, and keep equipment free of buildup to prevent hidden problems.

Mistake #5: Skipping Filtration Equipment Maintenance

Filtration equipment needs regular care to perform at its best. Neglecting maintenance can shorten equipment lifespan and reduce its effectiveness.

A simple maintenance routine includes:

  • Weekly visual inspections to catch problems early
  • Deep cleaning pumps, skimmers, and reactors every 1–2 months
  • Replacing worn parts as needed

It only takes a little effort to avoid major equipment failures later.

Mistake #6: Ignoring or Misusing Sponge Filters

Sponge filters are often overlooked, but they can easily trap uneaten food and lead to elevated nitrate levels if not properly maintained.

Rinse sponge filters weekly in saltwater to flush out detritus without killing beneficial bacteria. When a sponge becomes worn or hard to clean, it’s time to replace it.

Mistake #7: Underestimating Biological Filtration

Mechanical and chemical filtration are important, but biological filtration is what keeps nutrient levels stable over the long term.

To boost biological filtration:

  • Use quality live rock as a base
  • Add biomedia like ceramic spheres, bricks, or plates
  • Ensure plenty of surface area for beneficial bacteria to thrive on:

Strong biological filtration supports a balanced, resilient reef ecosystem.